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matlabtrack  (SourceForge net)

 
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    SourceForge net matlabtrack

    Matlabtrack, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/matlabtrack/product/SourceForge net
    Average 90 stars, based on 1 article reviews
    matlabtrack - by Bioz Stars, 2026-05
    90/100 stars

    Images

    1) Product Images from "Single molecule analysis of CENP-A chromatin by high-speed atomic force microscopy"

    Article Title: Single molecule analysis of CENP-A chromatin by high-speed atomic force microscopy

    Journal: eLife

    doi: 10.7554/eLife.86709


    Figure Legend Snippet:

    Techniques Used: Recombinant, Plasmid Preparation, Sequencing, Transfection, Software, Staining



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    <t>MatlabTrack</t> GUI for single-molecule tracking The various modules are bordered in red and numbered according to their sequence. 1. Press this button for loading the .tiff file (a time-lapse single-molecule movie), 2. Filter the images for denoising using Bandpass filter, 3. Create ROIs against your area of interest, where you want to track the single molecules (such as nucleus, spindle, transcription site visualized by GFP channel). A prompt will appear upon clicking “Add ROI” to load the reference image. 4. Detect particles using intensity thresholding, 5. Track the particles frame-to-frame to generate trajectories, 6. Manually check the tracks, delete, or edit, if necessary, 7. Analyze the tracks. Save the results as .mat file from the “File” menu.
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    Image Search Results


    Journal: eLife

    Article Title: Single molecule analysis of CENP-A chromatin by high-speed atomic force microscopy

    doi: 10.7554/eLife.86709

    Figure Lengend Snippet:

    Article Snippet: Software, algorithm , MatLabTrack , https://sourceforge.net/projects/single-molecule-tracking/ , , .

    Techniques: Recombinant, Plasmid Preparation, Sequencing, Transfection, Software, Staining

    MatlabTrack GUI for single-molecule tracking The various modules are bordered in red and numbered according to their sequence. 1. Press this button for loading the .tiff file (a time-lapse single-molecule movie), 2. Filter the images for denoising using Bandpass filter, 3. Create ROIs against your area of interest, where you want to track the single molecules (such as nucleus, spindle, transcription site visualized by GFP channel). A prompt will appear upon clicking “Add ROI” to load the reference image. 4. Detect particles using intensity thresholding, 5. Track the particles frame-to-frame to generate trajectories, 6. Manually check the tracks, delete, or edit, if necessary, 7. Analyze the tracks. Save the results as .mat file from the “File” menu.

    Journal: STAR Protocols

    Article Title: Single-molecule tracking for studying protein dynamics and target-search mechanism in live cells of S. cerevisiae

    doi: 10.1016/j.xpro.2022.101900

    Figure Lengend Snippet: MatlabTrack GUI for single-molecule tracking The various modules are bordered in red and numbered according to their sequence. 1. Press this button for loading the .tiff file (a time-lapse single-molecule movie), 2. Filter the images for denoising using Bandpass filter, 3. Create ROIs against your area of interest, where you want to track the single molecules (such as nucleus, spindle, transcription site visualized by GFP channel). A prompt will appear upon clicking “Add ROI” to load the reference image. 4. Detect particles using intensity thresholding, 5. Track the particles frame-to-frame to generate trajectories, 6. Manually check the tracks, delete, or edit, if necessary, 7. Analyze the tracks. Save the results as .mat file from the “File” menu.

    Article Snippet: MatlabTrack v6.0 (MATLAB) , Ball et al. , https://sourceforge.net/projects/single-molecule-tracking.

    Techniques: Sequencing

    MatlabTrack GUI for manually verifying the tracks (A) Using this window, you can visually verify the automated tracking performed by the software. You can also edit or delete or merge the tracks if required. (B) Example of a track that do not need any manual editing. (C) Example of tracks that we manually add and merge to make a single long track out of four short tracks. (D) Example of tracks that we manually delete.

    Journal: STAR Protocols

    Article Title: Single-molecule tracking for studying protein dynamics and target-search mechanism in live cells of S. cerevisiae

    doi: 10.1016/j.xpro.2022.101900

    Figure Lengend Snippet: MatlabTrack GUI for manually verifying the tracks (A) Using this window, you can visually verify the automated tracking performed by the software. You can also edit or delete or merge the tracks if required. (B) Example of a track that do not need any manual editing. (C) Example of tracks that we manually add and merge to make a single long track out of four short tracks. (D) Example of tracks that we manually delete.

    Article Snippet: MatlabTrack v6.0 (MATLAB) , Ball et al. , https://sourceforge.net/projects/single-molecule-tracking.

    Techniques: Software

    MatlabTrack GUI for analyzing survival time distribution The left curve shows the photobleaching kinetics. The right curve shows the survival time distribution. You can checkmark the “Photobleaching Correction” box to normalize the survival time distribution with the photobleaching kinetics. Based on the fitting of the survival time distribution (either single exponential fit or double exponential fit), the fraction of bound molecules has been calculated as “f1”. The inverse of the k off value represents the residence time. Click on the “Tools” menu and select “Generate Pie Chart” option to see the fraction of bound molecules with their residence time. The “total tracks” (red rectangle) should be generally >1000 for better statistical significance.

    Journal: STAR Protocols

    Article Title: Single-molecule tracking for studying protein dynamics and target-search mechanism in live cells of S. cerevisiae

    doi: 10.1016/j.xpro.2022.101900

    Figure Lengend Snippet: MatlabTrack GUI for analyzing survival time distribution The left curve shows the photobleaching kinetics. The right curve shows the survival time distribution. You can checkmark the “Photobleaching Correction” box to normalize the survival time distribution with the photobleaching kinetics. Based on the fitting of the survival time distribution (either single exponential fit or double exponential fit), the fraction of bound molecules has been calculated as “f1”. The inverse of the k off value represents the residence time. Click on the “Tools” menu and select “Generate Pie Chart” option to see the fraction of bound molecules with their residence time. The “total tracks” (red rectangle) should be generally >1000 for better statistical significance.

    Article Snippet: MatlabTrack v6.0 (MATLAB) , Ball et al. , https://sourceforge.net/projects/single-molecule-tracking.

    Techniques:

    Journal: STAR Protocols

    Article Title: Single-molecule tracking for studying protein dynamics and target-search mechanism in live cells of S. cerevisiae

    doi: 10.1016/j.xpro.2022.101900

    Figure Lengend Snippet:

    Article Snippet: MatlabTrack v6.0 (MATLAB) , Ball et al. , https://sourceforge.net/projects/single-molecule-tracking.

    Techniques: Virus, Recombinant, Imaging, Diagnostic Assay, Software, Control, Microscopy